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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmsFExtracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF. (662 aa)    
Predicted Functional Partners:
dmsE
Periplasmic decaheme cytochrome c DmsE.
  
 
 0.956
dmsB
Extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB.
  
  
 0.872
dmsA
Extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.870
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
  
 
 0.799
dmsH
Extracellular dimethyl sulfoxide/manganese oxide reductase accessory protein DmsH.
  
  
 0.746
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
  
 
 0.745
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
      
 0.714
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
    
 
 0.669
SO_4361
Extracellular oxidoreductase associated protein.
      
 0.570
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
      
 0.566
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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