Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsFExtracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF. (662 aa)    
Predicted Functional Partners:
dmsE
Periplasmic decaheme cytochrome c DmsE.
  
  
 0.965
dmsB
Extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB.
  
  
 0.938
dmsA
Extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.912
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
  
  
 0.803
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
      
 0.800
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
    
 
 0.763
SO_4358
Extracellular oxidoreductase molybdopterin-binding lipoprotein subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.758
dmsH
Extracellular dimethyl sulfoxide/manganese oxide reductase accessory protein DmsH.
  
  
 0.735
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
  
  
 0.707
SO_4357
Extracellular oxidoreductase FeS binding subunit.
      
 0.664
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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