STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsBExtracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB. (224 aa)    
Predicted Functional Partners:
dmsA
Extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.999
SO_4358
Extracellular oxidoreductase molybdopterin-binding lipoprotein subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.996
dmsF
Extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF.
  
  
 0.938
dmsE
Periplasmic decaheme cytochrome c DmsE.
  
  
 0.936
dmsG
Extracellular dimethyl sulfoxide/manganese oxide reductase chaperone DmsG.
 
  
 0.909
SO_4357
Extracellular oxidoreductase FeS binding subunit.
  
  
0.903
phsA
Sulfur reductase molybdoperterin-binding subunit PhsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.838
nrfD
Nitrite reductase quinol dehydrogenase component NrfD.
 
  
 0.752
fdnG
Nitrate-inducible formate dehydrogenase molybdopterin-binding subunit FdnG; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.745
torA
trimethylamine-N-oxide reductase TorA; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions.
 
 
 0.684
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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