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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1448Site-specific recombinase phage integrase family. (188 aa)    
Predicted Functional Partners:
SO_1447
Retinol acyltransferase domain protein.
       0.558
SO_2584
Membrane zinc metalloprotease.
 
    0.550
SO_1450
Protein of unknown function DUF2787.
  
    0.543
SO_0055
Tetratricopeptide repeat-containing protein.
 
   
 0.518
apt
Adenine phosphoribosyltransferase Apt; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.457
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
  
    0.438
SO_4625
Predicted phosphoribosyltransferase ComF family.
   
    0.422
SO_2518
Uncharacterized protein.
   
    0.418
SO_3149
Periplasmic amidohydrolase family protein.
   
    0.418
torF
TMAO reductase system outer membrane porin TorF.
  
    0.415
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.