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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1459Concanavalin A-like lectin/glucanase domain protein. (220 aa)    
Predicted Functional Partners:
SO_1458
P-loop ATPase superfamily protein.
  
  
 0.976
SO_1440
Bifunctional toxin-antitoxin system HepN family antidote fused to MNT family toxin.
      
 0.880
SO_1445
Transcriptional regulator CopG family.
      
 0.839
SO_1444
Toxin module of toxin-antitoxin system RelE/StbE family.
      
 0.838
intA
CP4-57-like prophage integrase IntA; Belongs to the 'phage' integrase family.
      
 0.808
yfjZ
Mu phage lytic protein YfjZ.
      
 0.800
hsdS-2
Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS.
  
    0.796
SO_1457
Type II restriction-modification system methyltransferase.
  
    0.785
SO_1461
Serine/threonine protein kinase.
  
    0.768
SO_1462
Cytoplasmic protein in type I restriction-modifcation system locus.
  
    0.765
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.