Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
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Co-expression
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[Homology]
Score
intACP4-57-like prophage integrase IntA; Belongs to the 'phage' integrase family. (415 aa)    
Predicted Functional Partners:
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
   
  
 0.972
xis
Lambda phage DNA excisionase Xis.
   
  
 0.951
SO_1440
Bifunctional toxin-antitoxin system HepN family antidote fused to MNT family toxin.
   
  
 0.943
SO_3146
DNA-binding protein H-NS family; Belongs to the histone-like protein H-NS family.
      
 0.939
SO_1458
P-loop ATPase superfamily protein.
      
 0.930
SO_1459
Concanavalin A-like lectin/glucanase domain protein.
      
 0.930
dxs
1-deoxy-D-xylulose-5-phosphate synthase Dxs; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
      
 0.882
yfjZ
Mu phage lytic protein YfjZ.
   
  
 0.817
alpA
Mu phage lytic protein AlpA.
  
  
 0.746
smpB
SsrA-binding protein SmpB; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switch [...]
      
 0.665
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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