Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1478TP-methylase family protein. (263 aa)    
Predicted Functional Partners:
SO_1479
Uncharacterized protein.
  
 
 0.998
kefC
Glutathione-gated K(+)-efflux system KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.980
SO_1480
Diguanylate cyclase.
    
 0.937
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
  
 0.830
SO_1059
Periplasmic alanyl aminopeptidase.
      
 0.807
SO_1944
2OG-Fe(II) oxygenase family protein.
  
    0.643
SO_3866
Site-specific recombinase phage integrase family; Belongs to the 'phage' integrase family.
  
     0.611
SO_4402
Uncharacterized protein.
  
    0.566
SO_1699
Transmembrane transcriptional regulator.
  
     0.560
SO_2902
RDD domain protein.
 
    0.553
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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