Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SO_1504Membrane protein of unknown function DUF3087. (173 aa)    
Predicted Functional Partners:
SO_2448
MutT/nudix family protein; Belongs to the Nudix hydrolase family.
  
    0.679
SO_0823
Membrane-associated zinc metalloprotease M50B family.
  
    0.637
SO_1148
Endonuclease/exonuclease/phosphatase family protein.
  
    0.606
SO_2794
Inner membrane protein of unknown function DUF445.
  
     0.557
SO_0366
P-loop containing nucleotide triphosphate hydrolase.
  
    0.554
SO_3983
Protein of unknown function UPF0231; Belongs to the UPF0231 family.
  
    0.517
flgT
Flagella assembly protein FlgT.
  
     0.490
SO_2622
Outer membrane protein SlyB-like protein.
  
     0.467
SO_2839
Protein of unknown function DUF3010.
  
     0.467
raiA
Ribosome-associated inhibitor A RaiA.
  
     0.448
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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