Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SO_1505Proton:peptide symporter POT family. (514 aa)    
Predicted Functional Partners:
SO_1277
Proton:oligopeptide symporter POT family.
  
  
 0.986
SO_0002
Glutathione uptake transporter.
  
  
 0.979
SO_0497
Serine/threonine protein kinase.
  
     0.768
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.758
SO_1661
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.738
SO_3124
Dual specificity protein-tyrosine phosphatase.
  
    0.705
SO_0939
Split-soret diheme cytochrome c.
  
     0.666
SO_4539
Extracellular peptidase family S8; Belongs to the peptidase S8 family.
  
   
 0.632
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.605
SO_3918
Periplasmic peptidase subfamily S1B.
  
    0.581
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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