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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvATranscriptional activator of glycine metabolism GcvA; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
SO_1534
Alpha/beta-hydrolase superfamily protein.
 
    0.817
cysB
Transcriptional activator of cys regulon CysB; Belongs to the LysR transcriptional regulatory family.
  
  
 0.737
ilvY
LysR family transcriptional regulator, positive regulator for ilvC; Acetohydroxybutyrate/acetolactate-responsive transcriptional regulator of isoleucine-valine biosynthesis IlvY; Belongs to the LysR transcriptional regulatory family.
  
   
 0.715
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.695
SO_4140
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.690
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.675
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.666
hmgR
Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; Belongs to the LysR transcriptional regulatory family.
  
   
 0.660
fadR
Transcriptional regulator of fatty acid metabolism FadR; Multifunctional regulator of fatty acid metabolism.
  
  
 0.658
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.640
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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