Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_15707TM intracellular signalling protein with GGDEF domain. (555 aa)    
Predicted Functional Partners:
SO_4657
Diguanylate cyclase/phosphodiesterase with PAS and LOV sensory domains and Chase small molecule binding site.
 
 
 0.815
SO_1208
Bifunctional diguanylate cyclase/phosphodiesterase.
  
   0.802
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
  
 0.789
SO_1255
Bifunctional diguanylate cyclase/phosphodiesterase.
  
   0.787
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
 0.783
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
 
  
 0.779
SO_3700
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
  
 
   0.778
SO_4145
Signalling protein with EAL and C2 domains.
  
    0.776
SO_1480
Diguanylate cyclase.
  
     0.775
SO_3556
Diguanylate cyclase with GAF sensory domain.
  
     0.775
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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