Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
SO_1581PhnA domain protein. (187 aa)    
Predicted Functional Partners:
SO_2924
Signal peptidase I; Belongs to the peptidase S26 family.
     
 0.811
map
Methionine aminopeptidase Map; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
   
  
 0.733
napA
Periplasmic nitrate reductase molybdopterin-binding subunit NapA; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
      
 0.668
lepB
Signal peptidase I LepB; Belongs to the peptidase S26 family.
     
 0.544
SO_1580
TonB-dependent haem/haemoglobin receptor.
       0.488
SO_1583
Succinylglutamate desuccinylase/aspartoacylase family protein.
 
     0.485
SO_1582
Transcriptional regulator MarR family.
       0.459
SO_4473
Autotransporter.
  
    0.425
arsC
Glutaredoxin-dependent arsenate reductase ArsC.
 
  
 0.404
chiA
Chitinase ChiA.
  
     0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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