Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1583Succinylglutamate desuccinylase/aspartoacylase family protein. (337 aa)    
Predicted Functional Partners:
rimK-3
Ribosomal protein S6 glutaminyl transferase RimK.
     0.779
rimK
Ribosomal protein S6 glutaminyl transferase RimK.
 
     0.772
rimK-4
Ribosomal protein S6 glutaminyl transferase RimK; Belongs to the RimK family.
 
     0.719
SO_1582
Transcriptional regulator MarR family.
  
    0.581
astD
Succinylglutamic semialdehyde dehydrogenase AstD; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
     
 0.508
SO_1581
PhnA domain protein.
 
     0.485
mfd
Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
      
 0.428
SO_3984
Metal ion transporter MIT family.
 
    0.426
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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