STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1617Protein of unknown function DUF3301. (128 aa)    
Predicted Functional Partners:
tnpA-38
ISSod4 transposase TnpA_ISSod4.
      
 0.832
SO_1615
Inner membrane protein of unknown function DUF962.
      
 0.809
SO_1618
Protein of unknown function DUF3549.
  
    0.777
tnpA-4
ISSod4 transposase TnpA_ISSod4; Required for the transposition of the insertion element.
      
 0.751
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase RsmA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
      
 0.750
yqcC
tRNA pseudouridine synthase C-associated protein of unknown function DUF446 YqcC.
       0.526
truC
tRNA pseudouridine65 synthase TruC.
       0.526
barA
Histidine kinase; Two component signal transduction system hybrid histidine kinase/response regulator with DUF2222 and Hpt domains BarA.
   
  
 0.479
uvrY
Two component signal transduction system response regulator UvrY.
      
 0.466
SO_3458
Protein of unknown function DUF416.
   
  
 0.464
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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