STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1618Protein of unknown function DUF3549. (337 aa)    
Predicted Functional Partners:
SO_1617
Protein of unknown function DUF3301.
  
    0.777
SO_2872
Membrane protein of unknown function DUF2069.
  
    0.730
SO_1110
Protein of unknown function DUF539.
  
     0.658
yqcC
tRNA pseudouridine synthase C-associated protein of unknown function DUF446 YqcC.
  
    0.655
truC
tRNA pseudouridine65 synthase TruC.
       0.651
SO_4729
Protein of unknown function DUF2489.
  
    0.616
flgT
Flagella assembly protein FlgT.
  
     0.590
SO_3458
Protein of unknown function DUF416.
  
     0.529
SO_3549
Hemerythrin.
  
     0.518
SO_3762
Membrane protein of unknown function DUF350.
  
     0.517
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.