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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqcCtRNA pseudouridine synthase C-associated protein of unknown function DUF446 YqcC. (106 aa)    
Predicted Functional Partners:
truC
tRNA pseudouridine65 synthase TruC.
  
  
 0.893
rdgC
Putative exonuclease RdgC; May be involved in recombination; Belongs to the RdgC family.
      
 0.788
apaH
Bis(5-nucleosyl)-tetraphosphatase ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
   
 0.773
rnhA
Ribonuclease HI RnhA; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      
 0.772
yebG
UV induced SOS regulon protein YebG.
      
 0.732
mutT
7,8-dihydro-8-oxoguanine-triphosphatase MutT.
      
 0.709
SO_1618
Protein of unknown function DUF3549.
  
    0.587
polA
DNA polymerase I PolA; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
      
 0.562
rsuA
16S rRNA pseudouridine516 synthase RsuA; Belongs to the pseudouridine synthase RsuA family.
  
   
 0.552
SO_1617
Protein of unknown function DUF3301.
  
    0.528
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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