STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1659Surface localized decaheme cytochrome c lipoprotein. (759 aa)    
Predicted Functional Partners:
SO_2931
Cytochrome c lipoprotein.
      
 0.801
nqrC-2
Na-translocating NADH-quinone reductase subunit C NqrC; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.
      
 0.669
dmsB
Extracellular dimethyl sulfoxide/manganese oxide reductase ferredoxin subunit DmsB.
  
  
 0.602
dmsA
Extracellular dimethyl sulfoxide/manganese oxide reductase molybdopterin-binding subunit DmsA; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
  
 0.547
SO_4358
Extracellular oxidoreductase molybdopterin-binding lipoprotein subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.477
SO_4357
Extracellular oxidoreductase FeS binding subunit.
  
  
 0.474
astD
Succinylglutamic semialdehyde dehydrogenase AstD; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
      
 0.468
SO_4359
Outer membrane protein MtrB family.
      
 0.449
deoB
Phosphopentomutase DeoB; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
      
 0.448
SO_3623
Flavocytochrome c heme submit.
  
 
 0.432
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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