STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1661Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family. (328 aa)    
Predicted Functional Partners:
SO_1505
Proton:peptide symporter POT family.
  
   
 0.726
rpmB
50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.
      
 0.714
SO_4526
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.681
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.680
SO_0497
Serine/threonine protein kinase.
  
     0.674
SO_1607
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.669
SO_2409
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.627
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
   
  
 0.604
SO_2930
Bifunctional pectinolytic enzyme/cytochrome c.
  
     0.577
SO_1662
Protein of unknown function DUF583.
 
     0.565
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.