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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phhBPterin-4-alpha-carbinolamine dehydratase PhhB. (112 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase PhhA.
 
 0.999
hppD
4-hydroxyphenylpyruvate dioxygenase HppD.
  
  
 0.943
aspC
Aspartate aminotransferase AspC.
  
  
 0.929
hmgA
Homogentisate 1,2-dioxygenase HmgA.
  
  
 0.905
aspC-2
Aspartate aminotransferase AspC.
  
  
 0.905
tyrR
Sigma54-dependent transcriptional activator of amino acid degradation TyrR.
  
  
 0.717
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
     
 0.601
asnC
Asparagine-responsive transcriptional regulator AsnC.
  
  
 0.586
purU
Formyltetrahydrofolate deformylase PurU; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
     
 0.551
SO_0055
Tetratricopeptide repeat-containing protein.
   
   0.524
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.