STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tyrRSigma54-dependent transcriptional activator of amino acid degradation TyrR. (512 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.778
tyrP
Tyrosine transporter TyrP.
      
 0.750
ycjF
Inner membrane protein of unknown function DUF697 YcjF.
     
 0.742
aroG
Phospho-2-dehydro-3-deoxyheptonate aldolase phe-sensitive AroG; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
      
 0.734
argR
Arginine-responsive transcriptional repressor of arginine metabolism ArgR; Regulates arginine biosynthesis genes.
      
 0.722
phhB
Pterin-4-alpha-carbinolamine dehydratase PhhB.
  
  
 0.717
liuC
methylglutaconyl-CoA hydratase LiuC.
   
    0.701
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
      
 0.696
phhA
Phenylalanine-4-hydroxylase PhhA.
     
 0.693
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
      
 0.679
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.