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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ivdDenoyl-CoA hydratase IvdD; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)    
Predicted Functional Partners:
ivdF
3-hydroxyisobutyrate dehydrogenase IvdF; Belongs to the HIBADH-related family.
 
  
 0.987
ivdC
2-methylbutanoyl-CoA dehydrogenase IvdC.
 
 0.980
ivdE
3-hydroxyisobutyryl-CoA hydrolase IvdE.
 
 
0.966
ivdA
3-ketoacyl-CoA thiolase IvdA; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.948
fadA
Aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.865
fadI
Anaerobic fatty oxidation complex beta subunit FadI; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.846
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
 
 0.829
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
  
 
 0.819
SO_4445
Two component signal transduction system hybrid histidine kinase/response regulator.
   
 
 0.818
liuA
isovaleryl-CoA dehydrogenase LiuA.
 
 0.817
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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