STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ivdG3-hydroxyacyl-CoA dehydrogenase IvdG. (252 aa)    
Predicted Functional Partners:
SO_0056
ABC-type transport system substrate binding component.
    
 
 0.970
SO_1143
Periplasmic substrate binding protein family 3.
    
 
 0.970
SO_1260
Extracellular solute-binding protein family 3.
    
 
 0.970
SO_1503
Periplasmic substrate binding protein family 3.
    
 
 0.970
SO_3481
Periplasmic substrate binding protein family 3.
    
 
 0.970
SO_3860
Periplasmic substrate binding protein family 3.
    
 
 0.970
SO_4528
Predicted periplasmic protein.
    
 
 0.970
SO_3412
Periplasmic solute binding protein.
    
 
 0.966
fabF
3-oxoacyl-(acyl-carrier-protein) synthase II FabF; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.962
SO_4380
Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 0.957
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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