STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1706ABC-type drugE1 family efflux system ATPase component. (324 aa)    
Predicted Functional Partners:
SO_1707
ABC-type drugE1 family efflux system permease component.
  
 0.996
SO_1705
ABC-type drugE1 family efflux system MFP component.
  
 0.964
SO_4088
ABC-type efflux system permease component 1.
 
  
 0.847
SO_4087
ABC-type efflux system permease component 2.
 
  
 0.839
nosY
ABC-type copper transport system permease component NosY.
 
 
 0.775
SO_4089
ABC-type efflux system MFP component.
 
  
 0.682
atpD
ATP synthase F1 beta subunit AtpD; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.504
nosD
ABC-type copper transport system substrate-binding component NosD.
 
 
 0.489
msbA
ABC-type lipid A export system bifunctional ATPase and permease components MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
0.488
nosL
ABC-type copper uptake system periplasmic chaperone component NosL.
  
 
 0.483
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.