Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1707ABC-type drugE1 family efflux system permease component. (373 aa)    
Predicted Functional Partners:
SO_1706
ABC-type drugE1 family efflux system ATPase component.
  
 0.996
SO_1705
ABC-type drugE1 family efflux system MFP component.
  
 0.960
nosF
ABC-type copper transport system ATPase component NosF.
 
  
 0.938
SO_1750
ABC-type transport system ATPase component.
 
  
 0.938
SO_1865
ABC-type export system ATPase component.
 
  
 0.938
SO_3802
ABC-type DrugE1 family export system ATPase component.
 
  
 0.937
SO_0073
ABC-type efflux system ATPase component.
 
  
 0.936
natA
ABC-type sodium efflux system ATPase component NatA.
     0.916
lptB
ABC-type lipopolysaccharide export system ATPase component LptB.
      0.901
cysA2
ABC-type sulfate/thiosulfate uptakesystem ATPase component CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
    0.898
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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