STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1707ABC-type drugE1 family efflux system permease component. (373 aa)    
Predicted Functional Partners:
SO_1706
ABC-type drugE1 family efflux system ATPase component.
  
 0.996
SO_1705
ABC-type drugE1 family efflux system MFP component.
  
 0.954
nosF
ABC-type copper transport system ATPase component NosF.
 
  
 0.934
SO_1750
ABC-type transport system ATPase component.
 
  
 0.934
SO_1865
ABC-type export system ATPase component.
 
  
 0.934
SO_3802
ABC-type DrugE1 family export system ATPase component.
 
  
 0.934
lptB
ABC-type lipopolysaccharide export system ATPase component LptB.
   
  0.934
SO_0073
ABC-type efflux system ATPase component.
 
  
 0.933
cysA2
ABC-type sulfate/thiosulfate uptakesystem ATPase component CysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
 
  0.932
potG
ABC-type putrescine uptake system ATPase component PotG; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
   
  0.918
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.