STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1750ABC-type transport system ATPase component. (292 aa)    
Predicted Functional Partners:
SO_1751
ABC-type transport system bifunctional permease and peptidase M1 family component.
 
   0.959
SO_1707
ABC-type drugE1 family efflux system permease component.
 
  
 0.934
SO_1424
Predicted outer membrane lipoprotein.
   
    0.841
nosY
ABC-type copper transport system permease component NosY.
 
 
 0.775
tonB-2
TonB mediated energy transduction system energy transducer component TonB.
   
    0.608
SO_1923
RND superfamily efflux pump permease component 1; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
      0.558
sapD
ABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily.
 
     
0.520
atpD
ATP synthase F1 beta subunit AtpD; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.504
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
  
     0.503
SO_3801
ABC-type DrugE1 family export systempermease component.
  
 0.502
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.