Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1751ABC-type transport system bifunctional permease and peptidase M1 family component. (1185 aa)    
Predicted Functional Partners:
SO_1750
ABC-type transport system ATPase component.
 
   0.964
SO_2900
Carbohydrate binding outer membrane protein.
 
     0.578
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
  
     0.562
SO_0152
Peptidase M14 carboxypeptidase A family.
  
     0.529
SO_3539
Peptidase M28D family.
  
 
 
 0.486
yeeZ
NAD-dependent enzyme of unknown function YeeZ.
  
   0.453
SO_3828
Protein of unknown function DUF819.
  
     0.424
SO_3560
Predicted non-catalytic member of peptidase subfamily M16B.
  
 
   0.416
SO_3148
Periplasmic amidohydrolase family protein.
  
     0.412
SO_3149
Periplasmic amidohydrolase family protein.
  
     0.410
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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