Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
altATranscriptional regulator AltA. (278 aa)    
Predicted Functional Partners:
SO_1759
Branched-chain amino acid efflux pump permease component 2 AzlD family.
 
     0.763
SO_3867
Transcriptional regulator Cro/CI family.
   
    0.694
SO_1760
Branched-chain amino acid efflux pump permease component 1 AzlC family.
 
    0.681
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
      
 0.661
SO_0639
Collagenase.
  
     0.542
yqfB
Putative RNA-binding protein YqfB; Belongs to the UPF0267 family.
   
    0.511
SO_0317
Transcriptional regulator AraC family.
  
   
 0.477
SO_4589
Transcriptional regulator AraC family.
 
 
 0.473
SO_1758
Transcriptional repressor DeoR family.
 
    0.466
satA
Streptogramin A acetyl transferase SatA.
       0.463
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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