STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1764Protein of unknown function DUF1706. (171 aa)    
Predicted Functional Partners:
satA
Streptogramin A acetyl transferase SatA.
       0.693
SO_1765
Uncharacterized protein.
       0.628
SO_3047
Protein of unknown function DUF1097.
  
     0.556
trpI
Transcriptional activator of tryptophan biosynthesis TrpI; Belongs to the LysR transcriptional regulatory family.
  
    0.531
SO_1760
Branched-chain amino acid efflux pump permease component 1 AzlC family.
 
    0.434
altA
Transcriptional regulator AltA.
  
    0.423
SO_0639
Collagenase.
  
     0.416
SO_4152
SnoaL family protein.
  
    0.412
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.