STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grtPD-glycerate transporter GrtP. (452 aa)    
Predicted Functional Partners:
garK
Glycerate kinase GarK; Belongs to the glycerate kinase type-1 family.
 
  
 0.944
sdaR
Transcriptional repressor of glycerate utilization SdaR.
 
  
 0.821
SO_4712
ABC-type transporter ATPase component.
      
 0.674
SO_4150
Sulphate transporter.
      
 0.668
SO_2045
Cation efflux protein CDF family.
      
 0.663
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
      
 0.663
SO_3063
Cation:alanine/glycine transporter AGCS family.
      
 0.663
SO_1580
TonB-dependent haem/haemoglobin receptor.
   
  
 0.662
hisIE
Bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase HisIE; In the C-terminal section; belongs to the PRA-PH family.
      
 0.505
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
   
  
 0.498
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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