STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grtPD-glycerate transporter GrtP. (452 aa)    
Predicted Functional Partners:
garK
Glycerate kinase GarK; Belongs to the glycerate kinase type-1 family.
 
  
 0.928
sdaR
Transcriptional repressor of glycerate utilization SdaR.
 
  
 0.742
SO_4150
Sulphate transporter.
      
 0.711
SO_4712
ABC-type transporter ATPase component.
      
 0.711
SO_3063
Cation:alanine/glycine transporter AGCS family.
      
 0.577
SO_1580
TonB-dependent haem/haemoglobin receptor.
   
  
 0.573
SO_2045
Cation efflux protein CDF family.
      
 0.570
pubB
N-hydroxyputrescine-succinyl CoA transferase PubB.
   
  
 0.530
pubC
NTP-dependent putrebactin synthetase PubC.
      
 0.509
cga
Glucan 14-alpha-glucosidase Cga.
      
 0.457
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.