STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdaRTranscriptional repressor of glycerate utilization SdaR. (407 aa)    
Predicted Functional Partners:
garK
Glycerate kinase GarK; Belongs to the glycerate kinase type-1 family.
 
  
 0.852
malR
Transcriptional repressor of maltodextrose utilization MalR.
   
  
 0.793
SO_4705
Transcriptional repressor Xre family.
      
 0.792
sfsA
Sugar fermentation stimulation protein SfsA; Belongs to the SfsA family.
      
 0.765
grtP
D-glycerate transporter GrtP.
 
  
 0.742
SO_1775
uracil-DNA glycosylase superfamily protein.
  
    0.720
glmR
Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR.
      
 0.580
yehU
Two component signal transduction system histidine kinase with GAF sensory domain YehU.
  
  
 0.525
zntR
Zinc and cadmium (II) responsive transcriptional activator ZntR.
      
 0.509
gcvA
Transcriptional activator of glycine metabolism GcvA; Belongs to the LysR transcriptional regulatory family.
      
 0.485
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.