Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sdaRTranscriptional repressor of glycerate utilization SdaR. (407 aa)    
Predicted Functional Partners:
garK
Glycerate kinase GarK; Belongs to the glycerate kinase type-1 family.
 
  
 0.873
malR
Transcriptional repressor of maltodextrose utilization MalR.
      
 0.861
SO_4705
Transcriptional repressor Xre family.
      
 0.861
grtP
D-glycerate transporter GrtP.
 
  
 0.821
sfsA
Sugar fermentation stimulation protein SfsA; Belongs to the SfsA family.
      
 0.805
SO_1775
uracil-DNA glycosylase superfamily protein.
  
    0.718
glmR
Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR.
      
 0.662
zntR
Zinc and cadmium (II) responsive transcriptional activator ZntR.
      
 0.480
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
  
   
 0.478
yheO
PAS sensory domain protein YheO.
  
     0.472
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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