STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrBExtracellular iron oxide respiratory system outer membrane component MtrB. (697 aa)    
Predicted Functional Partners:
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
 
 
 0.999
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
   
 
 0.999
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
 
 
 0.984
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
  
  
 0.979
cymA
Membrane anchored tetraheme cytochrome c CymA.
 
 
 0.974
dmsE
Periplasmic decaheme cytochrome c DmsE.
 
 
 0.957
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
     
 0.929
mtr
High affinity tryptophan transporter Mtr.
      
 0.901
SO_4360
Periplasmic decaheme cytochrome c MtrA family.
 
   0.852
SO_1412
Outer membrane beta barrel protein.
      
 0.823
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.