Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mtrAExtracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA. (333 aa)    
Predicted Functional Partners:
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
 
 
 0.999
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
     
 0.986
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
  
 
 0.985
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
  
 
 0.982
cymA
Membrane anchored tetraheme cytochrome c CymA.
  
  
 0.976
mtr
High affinity tryptophan transporter Mtr.
      
 0.970
fccA
Periplasmic fumarate reductase FccA; Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to trimethylamine oxide (TMAO). This enzyme is essentially unidirectional (By similarity); In the C-terminal section; belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
  
 0.933
mtrE
Extracellular respiratory sytem outer membrane component MtrE.
  
  
 0.903
nrfA
Ammonia-forming nitrite reductase NrfA; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process. Has very low activity toward hydroxylamine. Has even lower activity toward sulfite. Sulfite reductase activity is maximal at neutral pH (By similarity); Belongs to the cytochrome c-552 family.
  
 
 0.849
SO_1412
Outer membrane beta barrel protein.
   
  
 0.810
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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