Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mtrCExtracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC. (671 aa)    
Predicted Functional Partners:
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
   
 
 0.998
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
     
 0.986
cymA
Membrane anchored tetraheme cytochrome c CymA.
      
 0.970
mtr
High affinity tryptophan transporter Mtr.
      
 0.970
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
     
 0.961
mtrE
Extracellular respiratory sytem outer membrane component MtrE.
   
 
 0.936
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
     
0.897
fccA
Periplasmic fumarate reductase FccA; Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to trimethylamine oxide (TMAO). This enzyme is essentially unidirectional (By similarity); In the C-terminal section; belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
      
 0.888
dmsE
Periplasmic decaheme cytochrome c DmsE.
      
 0.799
cctA
Periplasmic tetraheme cytochrome c CctA.
      
 0.793
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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