STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtrFExtracellular respiratory system surface decaheme cytochrome c component MtrF. (639 aa)    
Predicted Functional Partners:
mtrD
Extracellular respiratory system periplasmic decaheme cytochrome c component MtrD.
  
 
 0.991
mtrE
Extracellular respiratory sytem outer membrane component MtrE.
  
  
 0.987
mtrA
Extracelllular iron oxide respiratory system periplasmic decaheme cytochrome c component MtrA.
  
 
 0.982
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
     
 0.968
mtr
High affinity tryptophan transporter Mtr.
      
 0.940
cymA
Membrane anchored tetraheme cytochrome c CymA.
  
 
 0.899
dmsE
Periplasmic decaheme cytochrome c DmsE.
  
 
 0.853
dmsF
Extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF.
      
 0.800
azu
Periplasmic azurin Azu; Transfers electrons from cytochrome c551 to cytochrome oxidase.
      
 0.668
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
     
0.631
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.