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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrDExtracellular respiratory system periplasmic decaheme cytochrome c component MtrD. (321 aa)    
Predicted Functional Partners:
mtrE
Extracellular respiratory sytem outer membrane component MtrE.
  
 
 0.990
mtrF
Extracellular respiratory system surface decaheme cytochrome c component MtrF.
  
 
 0.987
mtrB
Extracellular iron oxide respiratory system outer membrane component MtrB.
 
 
 0.984
mtrC
Extracellular iron oxide respiratory system surface decaheme cytochrome c component MtrC.
   
 
 0.958
omcA
Extracelllular iron oxide respiratory system surface decaheme cytochrome c component OmcA.
  
 
 0.927
dmsF
Extracellular dimethyl sulfoxide/manganese oxide reductase outer membrane translocase DmsF.
  
 
 0.799
cymA
Membrane anchored tetraheme cytochrome c CymA.
 
   
 0.789
mtr
High affinity tryptophan transporter Mtr.
      
 0.740
nrfA
Ammonia-forming nitrite reductase NrfA; Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process. Has very low activity toward hydroxylamine. Has even lower activity toward sulfite. Sulfite reductase activity is maximal at neutral pH (By similarity); Belongs to the cytochrome c-552 family.
  
 
 0.737
cctA
Periplasmic tetraheme cytochrome c CctA.
      
 0.731
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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