STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1787Inner membrane protein of unknown function DUF1282. (198 aa)    
Predicted Functional Partners:
rsd
Regulator of sigma D Rsd; Belongs to the Rsd/AlgQ family.
  
    0.691
miaE
tRNA-(MS(2)IO(6)A)-hydroxylase MiaE.
 
     0.638
SO_2884
SpoVR family protein.
   
    0.632
mshI1
MSHA biogenesis protein MshI1.
  
     0.564
SO_3902
Protein of unknown function DUF1249.
  
     0.563
coxB
Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.559
ndpA
Nucleoid-associated protein NdpA.
  
     0.543
mshL
MSHA system outer membrane secretin MshL.
  
     0.534
mshB
MSHA minor pilin protein MshB.
  
     0.527
flgM
Flagellar biosynthesis anti-sigma factor FlgM.
  
    0.509
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.