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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1787Inner membrane protein of unknown function DUF1282. (198 aa)    
Predicted Functional Partners:
rsd
Regulator of sigma D Rsd; Belongs to the Rsd/AlgQ family.
  
    0.686
SO_2884
SpoVR family protein.
   
  
 0.647
mshI1
MSHA biogenesis protein MshI1.
  
     0.564
SO_3902
Protein of unknown function DUF1249.
  
     0.563
miaE
tRNA-(MS(2)IO(6)A)-hydroxylase MiaE.
 
     0.549
ndpA
Nucleoid-associated protein NdpA.
  
     0.543
coxB
Aa3-type cytochrome c oxidase subunit II CoxB; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    0.536
mshL
MSHA system outer membrane secretin MshL.
  
     0.534
mshB
MSHA minor pilin protein MshB.
  
     0.527
flgM
Flagellar biosynthesis anti-sigma factor FlgM.
  
    0.507
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.