Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sapBABC-type peptide uptake system permease component 1 SapB. (343 aa)    
Predicted Functional Partners:
sapC
ABC-type peptide uptake system permease component 2 SapC.
 
 0.999
sapD
ABC-type peptide uptake system ATPase component 1 SapD; Belongs to the ABC transporter superfamily.
 
 0.998
sapF
ABC-type peptide uptake system ATPase component 2 SapF.
 
 0.997
sapA
ABC-type peptide uptake system substrate-binding component SapA.
  
 0.996
pspF
Sigma 54-dependent transcriptional activator of phage shock response PspF.
       0.576
pspB
Phage shock protein B PspB.
 
     0.563
pspA
PspF antagonist PspA.
       0.527
fabV
Enoyl acyl-carrier-protein reductase FabV; Involved in the final reduction of the elongation cycle of fatty acid synthesis (FAS II). Catalyzes the reduction of a carbon- carbon double bond in an enoyl moiety that is covalently linked to an acyl carrier protein (ACP); Belongs to the TER reductase family.
       0.520
trpCF
Bifunctional indole-3-glycerolphosphate synthetase/phosphoribosylanthranilate isomerase TrpCF; Belongs to the TrpC family.
      
 0.503
pspC
Phage shock protein C PspC.
       0.494
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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