Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ycjFInner membrane protein of unknown function DUF697 YcjF. (401 aa)    
Predicted Functional Partners:
ycjX
Protein of unknown function DUF463 YcjX.
  
 0.999
tyrR
Sigma54-dependent transcriptional activator of amino acid degradation TyrR.
     
 0.840
pspB
Phage shock protein B PspB.
     
 0.665
pspC
Phage shock protein C PspC.
     
 0.657
pspA
PspF antagonist PspA.
     
 0.636
SO_2017
Heat shock response protein.
   
    0.550
SO_3458
Protein of unknown function DUF416.
  
     0.469
sapA
ABC-type peptide uptake system substrate-binding component SapA.
       0.459
mdeA
Methionine gamma-lyase MdeA.
       0.457
sapC
ABC-type peptide uptake system permease component 2 SapC.
       0.454
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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