Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comFBLate competence development protein ComFB. (92 aa)    
Predicted Functional Partners:
SO_1817
Primosomal replication protein N'-like protein.
       0.742
SO_1815
Histone deacetylase superfamily protein.
       0.727
SO_1818
4-toluene sulfonate uptake permease family protein.
       0.727
dinG
ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase.
       0.727
SO_1816
Periplasmic protein of unknown function DUF2057; Belongs to the UPF0319 family.
       0.714
SO_2557
TIGR03503 family protein.
  
     0.707
SO_1968
Putative periplasmic protein.
   
    0.694
flgP
Outer membrane lipoprotein required for flagellar motility FlgP.
  
    0.691
SO_2439
Serine rich protein.
  
    0.658
cheW-4
Chemotaxis signal transduction system adaptor protein CheW.
  
     0.651
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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