STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1815Histone deacetylase superfamily protein. (304 aa)    
Predicted Functional Partners:
SO_1064
WD-40 repeat lipoprotein.
    
 0.899
htpG
Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity.
    
 0.866
dinG
ATP-dependent helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase.
   
 
 0.806
SO_1817
Primosomal replication protein N'-like protein.
  
    0.798
rapA
RNA polymerase-associated helicase RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily.
    
 0.785
SO_1651
helicase/SNF2 family domain protein.
    
 0.785
SO_1818
4-toluene sulfonate uptake permease family protein.
  
    0.782
SO_1816
Periplasmic protein of unknown function DUF2057; Belongs to the UPF0319 family.
       0.773
SO_3885
AAA ATPase family protein; Belongs to the AAA ATPase family.
 
 0.764
cobB
Deacetylase of acetyl-CoA synthetase NAD-dependent CobB; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.
    
 
 0.757
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.