Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1830Diguanylate cyclase. (169 aa)    
Predicted Functional Partners:
bpfA
Biofilm-promoting protein BpfA.
   
  
 0.806
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
  
  
 0.728
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
   
 
 0.706
pdeB
Signalling protein with PAS GGDEF and EAL domains; Affects motility and biofilm formation, and is linked to the regulation of sulfate uptake and assimilation.
   
  
 0.701
SO_4321
Pal-like T1SS-linked outer membrane lipoprotein.
      
 0.690
mxdB
Glycosyl transferase family 2 MxdB.
  
  
 0.686
SO_1831
Putative outer membrane lipoprotein of unknown function DUF885.
       0.551
flrA
Sigma54-dependent transcriptional regulator for flagellar biosynthesis FlrA.
      
 0.496
mxdA
Diguanylate cyclase-like protein MxdA.
   
  
 0.485
tolC
Global secretion system secretin TolC.
      
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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