Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ppiC-2Peptidyl-prolyl cis-trans isomerase PpiC. (92 aa)    
Predicted Functional Partners:
surA
Outer membrane protein maturation factor peptidyl-prolyl cis-trans isomerase SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
 
   
 0.777
fklB-3
Peptidyl-prolyl cis-trans isomerase FklB.
   
 
 0.563
fklB-2
Peptidyl-prolyl cis-trans isomerase FklB.
   
 
 0.556
fklB
Peptidyl-prolyl cis-trans isomerase FklB.
   
 
 0.555
fklB-4
Peptidyl-prolyl cis-trans isomerase FklB.
   
 
 0.555
tnpA-40
ISSod7 transposase TnpA_ISSod7.
       0.504
ygfZ
Folate-dependent protein involved in synthesis and repair of FeS clusters YgfZ; Belongs to the GcvT family.
   
  
 0.503
yrdA
Trimeric LpxA-like enzyme YrdA.
   
  
 0.499
obgE
50S ribosome assembly GTPase ObgE; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
   
  
 0.497
bipA
GTP-binding protein BipA.
  
  
 0.496
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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