STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yceHProtein of unknown function DUF480 YceH; Belongs to the UPF0502 family. (222 aa)    
Predicted Functional Partners:
nadE
NH(3)-dependent NAD(+) synthetase NadE; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source.
      0.654
yccA
Integral membrane FtsH interacting protein YccA; Belongs to the BI1 family.
   
    0.608
SO_1865
ABC-type export system ATPase component.
  
    0.540
SO_1866
ABC-type export system permease component.
       0.536
SO_2181
Uncharacterized protein.
  
    0.503
yitL
Nucleic acid binding superfamily protein YitL type; Belongs to the CvfB family.
       0.465
SO_1864
Uncharacterized protein.
       0.406
SO_0823
Membrane-associated zinc metalloprotease M50B family.
  
     0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.