STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speABiosynthetic arginine decarboxylase SpeA; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily. (637 aa)    
Predicted Functional Partners:
aguA
Agmatine deiminase AguA.
 
 
 0.987
astA
Arginine N-succinyltransferase AstA.
     
  0.900
argH
Argininosuccinate lyase ArgH.
     
 0.836
speC
Ornithine decarboxylase SpeC; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.794
SO_1550
Putative lysine decarboxylase with DUF3412 domain.
      
 0.786
fabD
Malonyl CoA-acyl carrier protein transacylase FabD.
   
    0.701
SO_1769
Glutamate decarboxylase.
      
 0.641
speF
Ornithine decarboxylase SpeF.
      
 0.625
gpsA
Glycerol-3-phosphate dehydrogenase (NADP+) GpsA; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
    0.608
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.580
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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