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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liuE3-hydroxymethylglutaryl-CoA lyase LiuE. (315 aa)    
Predicted Functional Partners:
liuC
methylglutaconyl-CoA hydratase LiuC.
 0.994
liuD
methylcrotonyl-CoA carboxylase biotin-binding subunit LiuD.
  
 0.988
ivdA
3-ketoacyl-CoA thiolase IvdA; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.986
liuF
acetyl-CoA:acetoacetate-CoA transferase alpha subunit LiuF.
  
 
 0.980
liuB
methylcrotonyl-CoA carboxylase carboxyl transferase subunit LiuB.
 
 0.967
liuG
acetyl-CoA:acetoacetate-CoA transferase beta subunit LiuG.
  
 
 0.966
fadA
Aerobic fatty oxidation complex 3-ketoacyl-CoA thiolase beta subunit FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
 0.921
fadI
Anaerobic fatty oxidation complex beta subunit FadI; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
  
 
 0.921
pflB
Pyruvate formate-lyase PflB.
     
  0.900
ivdE
3-hydroxyisobutyryl-CoA hydrolase IvdE.
  
 0.883
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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