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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1915Extracellular serine protease subtilase family; Belongs to the peptidase S8 family. (1300 aa)    
Predicted Functional Partners:
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
  
 0.925
sapSH
Extracellular serine alkaline protease SapSH.
  
  
 0.925
pfaC
Multi-domain beta-ketoacyl synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
      
 0.622
SO_3063
Cation:alanine/glycine transporter AGCS family.
   
    0.516
exeS
Extracellular nuclease ExeS.
  
    0.510
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
   
  
 0.457
pspA
PspF antagonist PspA.
 
   
 0.436
SO_0086
Predicted membrane protein.
  
     0.416
SO_0757
TPR domain lipoprotein.
 
     0.413
SO_4611
Aa3 type cytochrome c oxidase biogenesis protein Surf1-like protein.
  
 
   0.412
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.