Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_1915Extracellular serine protease subtilase family; Belongs to the peptidase S8 family. (1300 aa)    
Predicted Functional Partners:
sapSH
Extracellular serine alkaline protease SapSH.
  
  
 0.972
SO_3063
Cation:alanine/glycine transporter AGCS family.
   
    0.511
exeS
Extracellular nuclease ExeS.
  
    0.500
pspA
PspF antagonist PspA.
  
   
 0.488
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
      
 0.477
SO_0497
Serine/threonine protein kinase.
 
 
 
 0.434
SO_4016
Serine/threonine protein kinase.
   
 
 0.425
crp
cAMP-responsive regulator of catabolite repression Crp.
   
  
 0.421
SO_0086
Predicted membrane protein.
  
     0.416
SO_0757
TPR domain lipoprotein.
 
     0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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