STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1918Multidrug and toxin efflux protein MATE family. (501 aa)    
Predicted Functional Partners:
SO_1917
Major facilitator superfamily transporter required for growth on DMSO MFS superfamily.
  
  
 0.755
SO_2523
TonB-dependent phytase receptor.
   
  
 0.534
SO_4527
10 TMS drug/metabolite efflux pump (DME) family.
   
  
 0.534
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
   
  
 0.526
ktrA
Sodium-dependent potassium uptake system NAD binding component KtrA.
  
  
 0.521
SO_3691
ABC-type macrolide family export system permease component 2.
     
 0.521
SO_3692
ABC-type macrolide family export system ATPase component.
   
  
 0.519
macC
ABC-type macrolide export system secretin component MacC.
      
 0.517
SO_3694
ABC-type macrolide family export system MFP component.
   
  
 0.517
SO_0455
Alpha-ketoglutarate uptake system bifunctional large and small subunit permease component.
      
 0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.