STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1942Cyclic di-GMP hydrolase. (420 aa)    
Predicted Functional Partners:
SO_2241
Protein of unknown function DUF3334.
  
 
   0.574
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
 
 0.546
SO_2224
Acteyltransferase GNAT family.
  
    0.542
SO_2434
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
 
   0.519
SO_4734
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
 0.511
SO_0555
Bifunctional diguanylate cyclase/phosphodiesterase.
 
 
 0.480
SO_4323
Bifunctional diguanylate cyclase/phosphodiesterase LasD-like protein.
 
 
 0.456
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
 
 0.451
SO_4557
Methyl-accepting chemotaxis protein with Cache sensory domain.
   
   0.441
SO_3556
Diguanylate cyclase with GAF sensory domain.
 
 
 0.435
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.