Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SO_1949Invasin domain protein. (1237 aa)    
Predicted Functional Partners:
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
 
 0.743
sapSH
Extracellular serine alkaline protease SapSH.
  
 
 0.714
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
     0.604
pilY
Type IV pili system adhesin PilY.
 
   
 0.582
SO_1557
Outer membrane phosphoporin.
  
    0.570
SO_1482
TonB-dependent receptor.
  
     0.564
ilvM
Acetolactate synthase II small subunit IlvM.
  
     0.530
gspC
T2aSS secretion system protein GspC.
  
    0.523
SO_2034
Uncharacterized protein.
   
    0.511
C
Mu phage transcriptional regulator Cro/CI family C.
   
    0.511
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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