Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_1954Homogentisate export protein. (207 aa)    
Predicted Functional Partners:
SO_3657
Putative amino acid efflux permease RhtB family.
  
    0.861
SO_0530
Amino acid efflux protein RhtB family.
  
     0.772
SO_0765
Putative amino acid efflux permease RhtB family.
  
    0.767
yjdF
Membrane protein of unknown function DUF2238 YjdF.
  
    0.503
SO_1125
10 TMS drug/metabolite efflux pump (DME) family.
  
    0.442
SO_1658
Protein of unknown function DUF2982.
   
    0.429
SO_1955
Uncharacterized protein.
  
    0.411
argO
L-arginine efflux tranporter ArgO.
  
  
 0.411
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.