Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hmgAHomogentisate 1,2-dioxygenase HmgA. (386 aa)    
Predicted Functional Partners:
hppD
4-hydroxyphenylpyruvate dioxygenase HppD.
 
 0.999
maiA
Maleylacetoacetate isomerase MaiA.
  
 
 0.995
phhA
Phenylalanine-4-hydroxylase PhhA.
 
  
 0.988
fahA
Fumarylacetoacetate hydrolase FahA.
 
  
 0.965
phhB
Pterin-4-alpha-carbinolamine dehydratase PhhB.
  
  
 0.879
hmgR
Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; Belongs to the LysR transcriptional regulatory family.
     
 0.711
SO_1585
Fumarylacetoacetate hydrolase family protein.
  
  
 0.706
tyrR
Sigma54-dependent transcriptional activator of amino acid degradation TyrR.
     
 0.643
aspC
Aspartate aminotransferase AspC.
  
  
 0.642
aspC-2
Aspartate aminotransferase AspC.
  
  
 0.613
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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